News and thoughts – Page 4

Scikit-learn NIPS 2011 sprint: international thanks to our sponsors

The NIPS conference: time for a sprint. The NIPS conference, one of the major conferences in machine learning, is hosted in Granada this year. I believe that it is the first time that it is hosted in Europe. As many of the scikit-learn developers are part of the wider NIPS …

Cython example of exposing C-computed arrays in Python without data copies

Some advice on passing arrays from C to Python avoiding copies. I use Cython as I have found the code to be more maintainable than hand-written Python C-API code.

I found out that there was no self-contained example of creating numpy arrays from existing data in Cython. Thus I created …

Python at scientific conferences

Top notch scientific conferences are starting to add Python tracks to their program. This is good news. Indeed, it scientific Python conferences (namely Scipy, EuroSciPy and Scipy India) are doing great to get together people who have already heard about Python for science, but we need to reach out to …

Conference posters

At the request of a friend, I am putting up some of the posters that I recently presented at conferences.

Large-scale functional-connectivity graphical models for individual subjects using population prior.

This is a poster for our NIPS work

PDF


Multi-subject dictionary learning to segment an atlas of brain spontaneous activity …

Hiring a junior developer on the scikit-learn

Once again, we are looking for a junior developer to work on the scikit-learn. Below is the official job posting. As a personal remark, I would like to stress that this is a unique opportunity to be payed for two years to work on learning and improving the scientific Python …

My conference travels: Scipy 2011 and HBM 2011

The Scipy 2011 conference in Austin

Last week, I was at the Scipy conference in Austin. It was really great to see old friends, and Austin is such a nice place.

The Scipy conference was held in UT Austin’s conference center, which is a fantastic venue. This is the …

Euroscipy 2011: early bird deadline soon

Euroscipy 2011: register now for early bird prices

The deadline for early-bird registration at the Euroscipy conference is this Sunday. Beyond this deadline prices will double. Register now to get a great deal.

To register, simply go to www.euroscipy.org, log in using the link on the top right …

Hiring a junior engineer on the scikit-learn

The scikit-learn is a Python module for machine learning. The project builds on the scientific and numerical tools of the scipy community to provide state-of-the-art data analysis tools. It is developed by a community of open source developers to which my research team (Parietal, INRIA) contributes a lot and is …

EuroScipy: the program is filling up, and the submission deadline nearing

Submission deadline May 8th

The deadline for the call for presentation for the EuroScipy conference is on May 8th. There is only a week and a half left.

EuroScipy will be held in Paris, August 25-28. It is the European meeting for users of Python in scientific and numerical-intensive applications …

Scikit-learn sprint on April 1st

The scikit-learn team is organizing a sprint on April 1st (that next Friday). Join us in Paris, Boston, or on IRC!

With the rise of the data sciences, the scikit-learn, a BSD-licensed Python package for machine learning, is becoming an asset for more and more endeavors. Machine learning has traditionally …

Windows binaries for the scientific Python ecosystem

I just realized yesterday that Christoph Gohlke has a repository of binary installers (.exe) for Windows 32 and 64bit with almost all the scientific Python packages that you can dream of:

  • numpy, scipy and matplotlib, of course (compiled with the MKL)
  • cython
  • the ETS, including Mayavi
  • VTK, with the Python …

Interested in parallel computing and statistics? We are looking for a post-doc

My research group is kick starting a new project, called AzureBrain to do computational analysis of large brain imaging and genetics population-wise data. One of the goals of the project is to harness the power of grid computing to do statistical learning on fMRI data, finding features in an individuals …

EuroSciPy 2011: the dates are out - Aug 25-28, Paris

We have finally been able to settle on final dates and venue for EuroSciPy 2011, the 4th European meeting on Python in Science.

The conference will be held from Thursday August 25th, to Sunday August 28th. The ENS will be hosting the conference once again, right in the center of …

Research jobs in France: the black humor of 2010 is the reality of 2011

The French basic research landscape is dominated by a few nationwide institute, similar to the NIST or the NIH in the US. The largest of these is the CNRS (Centre National de la Recherche Scientific). Getting a tenured job in one of those institutes enables someone to focus on basic …

Scientific publication for software development

The academic community seems to judge the validity and significance of any contribution by the number of papers published and the number of citations they get. To find funding, to get credit, you have to publish or perish. However, the natural output of software development tends not to be an …

ICA versus PCA in the scikit-learn: the value of code over pictures

When I was trying to get an intuitive feeling of the difference between Independent Component Analysis (ICA) and Principal Component Analysis (PCA), I wrote a few Python scripts producing some visualizations explaining the difference that have had a bit of success.

During the last sprint on scikit-learn, a machine learning …

Multitouch with VTK (and MedINRIA and Mayavi)

If the videos on this post are not showing, click through to see them.

A colleague of mine, Pierre Fillard, has just integrated multitouch in the next generation of the VTK-based medical imaging software MedINRIA. The nice thing is that it works on an Apple laptop out of the box …

Machine learning humour

Yes, but they overfit

If you are reading this post through a planet, the movie isn’t showing up, just click through to understand what the hell this is about.

Some explanations…

Machine learning, geeks, and beers

Sorry for the bad humour. In the previous weeks my social geek life …

Scikit Learn coding sprint

We have been really crap at communicating the next scikit-learn coding sprint. It’s next week!

The coding sprint will take place the 8 and 9 September at INRIA Saclay, near Paris, in the room K110 (building K).

For those who cannot make it, it will be possible to participate …

SVG Word map of countries

To be able to visualize some quantities attached to countries all over the world, I needed a image with various countries color-coded. The fantastic matplotlib basemap package was not an option as I really needed a static image.

So I generated an SVG image with all the countries. It was …