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Scientific progress calls for reproducing results. Due to limited resources, this is difficult even in computational sciences. Yet, reproducibility is only a means to an end. It is not enough by itself to enable new scientific results. Rather, new discoveries must build on reuse and modification of the state …
Christophe Pradal, Hans Peter Langtangen, and myself recently edited a version of the Journal of Computational Science on scientific software, in particular those written in Python. We wrote an editorial defending writing and publishing open source scientific software that I wish to summarize here. The full text preprint is openly …
Open research computation (ORC) was an attempt to create a scientific publication promoting high-quality and open source scientific code. The project went public in falls 2010, but last month, facing the low volume of submission, the editorial board chose to reorient it as a special track of an existing journal …
At the request of a friend, I am putting up some of the posters that I recently presented at conferences.
Large-scale functional-connectivity graphical models for individual subjects using population prior.
This is a poster for our NIPS work
Multi-subject dictionary learning to segment an atlas of brain spontaneous activity …
The academic community seems to judge the validity and significance of any contribution by the number of papers published and the number of citations they get. To find funding, to get credit, you have to publish or perish. However, the natural output of software development tends not to be an …
Some advices and examples on making posters for scientific conference.
A simple LaTeX document, to use as a skeletton
We are finally announcing the online edition of SciPy proceedings:
http://conference.scipy.org/proceedings/SciPy2009/
This year, we tried to raise the bar in terms of article quality. This involved having a more strict review process, and we must thank a lot all the reviewers. I have the feeling …
I have never sold the rights to the article I published in LinuxMagazine France on scientific computing with Python. So I am uploading it to the net, under a CC-by-SA license : http://hal.inria.fr/hal-00776672/
It is in French, so it restricts the audience.
The French LinuxMag just published a special edition on Python, in which I authored a 12-page article on scientific computing. The edition is in French, so if you don’t speak French, it is of limited interested.
Ce dossier hors-série est une excellente ressource pour découvrir Python, entre autre par …
Pauli Virtanen and myself have finally finished transfering the numpy documentation editor to http://docs.scipy.org. The documentation editor is a project that has been mainly championed by Pauli. It allows you to edit in a wiki-like fashion the documentation for numpy, including the docstring. The changes are reviewed …
The SciPy conference proceedings are finally available online: http://conference.scipy.org/proceedings/SciPy2008 .
I hope you enjoy them. I find it great to have this set of excellent articles talking about works done with, or for, Python in science. For me, it is a reference to remember what was …
Suppose you have a dynamic website using turbogears, and you want to publish part of the content of this dynamic site to a static website, for instance to garanty its perenity. Well turbogears makes it really hard for you to do this. On the mailing lists they pretty …
After Ipython and Sympy, Mayavi is now using sphinx to build its docs. Sphinx is very neat because it allows for high quality pdf and html from the same restructured text source. The killer feature is that the resulting html pages have a builtin search that works with javascript, and …
The main files of my phd thesis, to give an example of the LaTeX code used
An easy to install version of Garamond fonts for LaTeX
